Submission Type
Event
Expected Graduation Date
2016
Location
Atrium, Center for Natural Sciences, Illinois Wesleyan University
Start Date
4-20-2013 2:00 PM
End Date
4-20-2013 3:00 PM
Disciplines
Biology
Abstract
Members of the Illinois Wesleyan General Biology Science Education Alliance (SEA) laboratory isolated and characterized fifteen distinctive phages capable of infecting Mycobacterium smegmatis. Each student collected soil samples from the central Illinois area and used direct plating or enrichment techniques to isolate phages. Streak assays were used to purify single phage populations. Individual phage populations were then characterized and DNA was isolated. Based on the following characteristics; plaque morphology (size and turbidity), life style (temperate or lytic) and DNA restriction patterns, we determined that each student has isolated a unique phage. The DNA from a single Mycobacteriophage, Kazan, was sent to the University of Pittsburgh for genome sequencing. DNA Sequencing determined that Kazan is 52,160 base pairs, including 10 base pair 3' overhang (CGGTCGGTTA), and a member of the A6 subcluster of Mycobacteriophages. Kazan is most closely related to the phages EricB and DaVinci (99% identity). Genome analysis, using the computer programs DNA Master, Glimmer, GeneMark, and Aragorn, determined that the Kazan genome housed 99 genes and 3 tRNAs. The potential protein function for each gene was determined using the computer programs HHPred, BLASTP and Phamerator. All the individual phage data was submitted to the Mycobacteriophage DataBase and the genome annotation, when completed, will be submitted to the DNA database, GenBank.
Included in
Isolation and Characterization of Novel Mycobacteriophages From the Central Illinois Region
Atrium, Center for Natural Sciences, Illinois Wesleyan University
Members of the Illinois Wesleyan General Biology Science Education Alliance (SEA) laboratory isolated and characterized fifteen distinctive phages capable of infecting Mycobacterium smegmatis. Each student collected soil samples from the central Illinois area and used direct plating or enrichment techniques to isolate phages. Streak assays were used to purify single phage populations. Individual phage populations were then characterized and DNA was isolated. Based on the following characteristics; plaque morphology (size and turbidity), life style (temperate or lytic) and DNA restriction patterns, we determined that each student has isolated a unique phage. The DNA from a single Mycobacteriophage, Kazan, was sent to the University of Pittsburgh for genome sequencing. DNA Sequencing determined that Kazan is 52,160 base pairs, including 10 base pair 3' overhang (CGGTCGGTTA), and a member of the A6 subcluster of Mycobacteriophages. Kazan is most closely related to the phages EricB and DaVinci (99% identity). Genome analysis, using the computer programs DNA Master, Glimmer, GeneMark, and Aragorn, determined that the Kazan genome housed 99 genes and 3 tRNAs. The potential protein function for each gene was determined using the computer programs HHPred, BLASTP and Phamerator. All the individual phage data was submitted to the Mycobacteriophage DataBase and the genome annotation, when completed, will be submitted to the DNA database, GenBank.